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Jenkins, Michael A.. "Vegetation and Ecology of the ATBI Plots." ATBI Quarterly 2, no. 3 (2001): 6-7.
Jenkins, Michael A.. "Impact of the Balsam Woolly Adelgid (Adelges piceae Ratz.) on an Abies fraseri (Pursh) Poir. Dominated Stand near the Summit of Mount LeConte, Tennessee." Castanea 68, no. 2 (2003): 109-118.
Jenkins, Michael A., and Pete Biggam. "Soils Inventory Unearths New Species at Great Smoky Mountains National Park." In Natural Resource Year in Review - 2002: A Portrait of the Year in Natural Resource Stewardship and Science in the National Park System, edited by Natural Resource Information Division, 25. Washington, D.C.: National Park Service, 2003.
Holzmueller, Eric J., Shibu Jose, Michael A. Jenkins, Ann Camp, and Alan Long. "Dogwood Anthracnose in Eastern Hardwood Forests: What Is Known and What Can Be Done?" Journal of Forestry 104, no. 1 (2006): 21-26.
Holzmueller, Eric J., Shibu Jose, and Michael A. Jenkins. The Effect of Fire on Flowering Dogwood Stand Dynamics in Great Smoky Mountains National Park In General Technical Report. Asheville, NC: U.S. Department of Agriculture, Forest Service, Southern Research Station, 2006.
Holzmueller, Eric J., Shibu Jose, and Michael A. Jenkins. "Influence of Calcium, Potassium, and Magnesium on Cornus florida L. Density and Resistance to Dogwood Anthracnose." Plant and Soil 290, no. 1-2 (2006): 189-199.
Kuppinger, Dane M., Peter S. White, and Michael A. Jenkins. Predicting the Invasion of the Exotic Species Paulownia tomentosa Following Burning in Pine and Oak-Pine Forests of the Mountains In Joint Fire Science Project. Chapel Hill, NC: The University of North Carolina, 2006.
Griggs, Jennifer A., Janet H. Rock, Christopher R. Webster, and Michael A. Jenkins. "Vegetative Legacy of a Protected Deer Herd in Cades Cove, Great Smoky Mountains National Park." Natrual Areas Journal 26, no. 2 (2006): 126-136.
Webster, Christopher R., Michael A. Jenkins, and Shibu Jose. "Woody Invaders and the Challenges They Pose to Forest Ecosystems in the Eastern United States." Journal of Forestry 104, no. 7 (2006): 366-374.