Zhou, Xin, Jason L. Robinson, Christy J. Geraci, Charles R. Parker, Oliver S. Flint, David A. Etnier, David Ruiter, Edward R. DeWalt, Luke M. Jacobus, and Paul D. N. Hebert. "Accelerated Construction of a Regional DNA-barcode Reference Library: Caddisflies (Trichoptera) in the Great Smoky Mountains National Park." Journal of the North American Benthological Society 30, no. 1 (2011): 131-162.

Sanders, Nathan J., Robert R. Dunn, Matthew C. Fitzpatrick, Christopher E. Carlton, Michael R. Pogue, Charles R. Parker, and Theodore R. Simons. "Diverse Elevational Diversity Gradients in Great Smoky Mountains National Park, U.S.A." In Data Mining for Global Trends in Mountain Biodiversity, edited by Eva A. Spehn and Christian Korner, 75-87. Boca Raton: CRC Press, 2010.

Parker, Charles R., Oliver S. Flint, Luke M. Jacobus, Boris C. Kondratieff, Patrick W. McCafferty, and John C. Morse. "Ephemeroptera, Plecoptera, Megaloptera, and Trichoptera or Great Smoky Mountains National Park." Southeastern Naturalist 6, no. sp2 (2007): 159-174.

Lessard, Jean-Philippe, Robert R. Dunn, Charles R. Parker, and Nathan J. Sanders. "Rarity and Diversity in Forest Ant Assemblages of Great Smoky Mountains National Park." Southeastern Naturalist 6, no. sp2 (2007): 215-228.

Dunn, Robert R., Charles R. Parker, and Nathan J. Sanders. "Temporal Patterns of Diversity:  Assessing the Biotic and Abiotic Controls on Ant Assemblages." Biological Journal of the Linnean Society 91, no. 2 (2007): 191-201.

Petersen, Matthew J., Charles R. Parker, and Ernest C. Bernard. "The Crane Flies (Diptera: Tipuloidea) of Great Smoky Mountains National Park." Zootaxa 1013 (2005): 1-18.

Etnier, David A., Charles R. Parker, and Ian C. Stocks. "A New Species of Rhyacophila pictet (Trichoptera : rhyacophilidae) from Great Smoky Mountains National Park, with Illustrations of Females of R. Appalachia Morse and Ross and R. mycta Ross." Proceedings of the Entomological Society of Washington 106, no. 2 (2004): 396-406.

Parker, Charles R.. "Note on Caddisflies." ATBI Quarterly 2, no. 3 (2001): 1.

Parker, Charles R.. "Neophylax kolodskii (Trichoptera : Uenoidae), A New Species From the Great Smoky Mountains National Park, USA." Aquatic Insects 22, no. 4 (2000): 271-274.

Etnier, David A., John T. Baxter, Stephen J. Fraley, and Charles R. Parker. "A Checklist of the Trichoptera of Tennessee." Journal of the Tennessee Academy of Science 73, no. 1/2 (1998): 53-72.

Parker, Charles R.. "A Review of Goerita (Trichoptera: Goeridae), with Description of a New Species." Insecta Mundi 12, no. 3/4 (1998): 227-238.

Hayes, John P., Stanley Z. Guffey, Frank J. Kriegler, Gary F. McCracken, and Charles R. Parker. "The Genetic Diversity of Native, Stocked, and Hybrid Populations of Brook Trout in the Southern Appalachians." Conservation Biology 10, no. 5 (1996): 1403-1412.

McCracken, Gary F., Charles R. Parker, and Stanley Z. Guffey. "Genetic Differentiation and Hybridization between Hatchery Stock and Native Brook Trout in Great Smoky Mountains National Park." Transactions of the American Fisheries Society 122, no. 4 (1993): 533-542.

McCracken, Gary F., Charles R. Parker, and Stanley Z. Guffey. "Genetic Differentiation and Hybridization between Stocked Hatchery and Native Brook Trout in Great Smoky Mountains National Park." Transactions of the American                        Fisheries Society 122, no. 4 (1993): 533-542.

Parker, Charles R., Keith R. Langdon, James R. Carter, Stephen C. Nodvin, and Hope Barett. Natural Resource Management and Research in Great Smoky Mountains National Park In Second International Symposium on Advanced Technology in Natural Resources Management. Washington, DC, 1990.

Parker, Charles R., and David W. Pipes. Watersheds of Great Smoky Mountains National Park: A Geographical Information System Analysis. Gatlinburg, Tennessee: Uplands Field Research Laboratory, Great Smoky Mountains National Park, 1990.