Keller, Rebecca Hylton, Lingtian Xie, David B. Buckwalter, Kathleen E. Franzreb, and Theodore R. Simons. "Mercury Bioaccumulation in Southern Appalachian Birds, Assessed through Feather Concentrations." Ecotoxicology 23, no. 1 (2014).

Sanders, Nathan J., Robert R. Dunn, Matthew C. Fitzpatrick, Christopher E. Carlton, Michael R. Pogue, Charles R. Parker, and Theodore R. Simons. "Diverse Elevational Diversity Gradients in Great Smoky Mountains National Park, U.S.A." In Data Mining for Global Trends in Mountain Biodiversity, edited by Eva A. Spehn and Christian Korner, 75-87. Boca Raton: CRC Press, 2010.

Podolsky, Andrei Lvovich, Theodore R. Simons, and Jaime A. Collazo. "Modeling Population Growth of the Ovenbird (Seiuruss Aurocapilla) in the Southern Appalachians." The Auk 124, no. 4 (2007): 1359-1372.

Alldredge, Matthew W., Kenneth H. Pollock, Theodore R. Simons, Jaime A. Collazo, and Susan A. Shriner. "Time-of-Detection Method for Estimating Abundance from Point-Count Surveys." Auk 124, no. 2 (2007): 653-664.

Simons, Theodore R., Susan A. Shriner, and George L. Farnsworth. "Comparison of Breeding Bird and Vegetation Communities in Primary and Secondary Forests of Great Smoky Mountains National Park." Biological Conservation 129 (2006): 302-311.

Bailey, Larissa Lynn, Theodore R. Simons, and Kenneth H. Pollock. "Comparing Population Size Estimators for Plethodontid Salamanders." Journal of Herpetology 38, no. 3 (2004): 370-380.

Bailey, Larissa Lynn, Theodore R. Simons, and Kenneth H. Pollock. "Estimating Detection Probability Parameters for Plethodon Salamanders Using the Robust Capture-Recapture Design." Journal of Wildlife Management 68, no. 1 (2004): 1-13.

Bailey, Larissa Lynn, Theodore R. Simons, and Kenneth H. Pollock. "Estimating Site Occupancy and Species Detection Probability Parameters for Terrestrial Salamanders." Ecological Applications 14, no. 3 (2004): 692-702.

Podolsky, Andrei Lvovich, Theodore R. Simons, and Jaime A. Collazo. "A Method of Food Supplementation for Ground-Foraging Insectivorous Songbirds." Journal of Field Ornithology 75, no. 3 (2004): 296-302.

Bailey, Larissa Lynn, Theodore R. Simons, and Kenneth H. Pollock. "Spatial and Temporal Variation in Detection Probability of Plethodon Salamanders Using the Robust Capture-Recapture Design." Journal of Wildlife Management 68, no. 1 (2004): 14-24.

Lichstein, Jeremy W., Theodore R. Simons, and Kathleen E. Franzreb. "Landscape Effects on Breeding Songbird Abundance in Managed Forests." Ecological Applications 12, no. 3 (2002): 836-857.

Farnsworth, George L., Kenneth H. Pollock, James D. Nichols, Theodore R. Simons, James E. Hines, and John R. Sauer. "A Removal Model for Estimating Detection Probabilities from Point-Count Surveys." Auk 119, no. 2 (2002): 414-425.

Lichstein, Jeremy W., Theodore R. Simons, Susan A. Shriner, and Kathleen E. Franzreb. "Spatial Autocorrelation and Autoregressive Models in Ecology." Ecological Monographs 72, no. 3 (2002): 445-463.

Shriner, Susan A.. Distribution of Breeding Birds in Great Smoky Mountains National Park In Zoology, Edited by Theodore R. Simons. Raleigh, NC: North Carolina State University, 2001.

Farnsworth, George L., and Theodore R. Simons. "How Many Baskets? Clutch Sizes that Maximize Annual Fecunity of Multiple-Brooded Birds." The Auk 118, no. 4 (2001): 973-982.

Hyde, Erin J., and Theodore R. Simons. "Sampling Plethodontid Salamanders: Sources of Variability." Journal of Wildlife                        Management 65, no. 4 (2001): 624-632.

Simons, Theodore R., George L. Farnsworth, and Susan A. Shriner. "Evaluating Great Smoky Mountains National Park as a Population Source for the Wood Thrush." Conservation Biology 14, no. 4 (2000): 1133-1144.

Simons, Theodore R., Larissa Lynn Bailey, Erin J. Hyde, and Kenneth H. Pollock. Evalution of Salamander Habitat Associations and Population Monitoring Techniques in Great Smoky Mountains National Park In 1999 Annual Report . Raleigh, NC: North Carolina State University, 2000.

Farnsworth, George L., and Theodore R. Simons. "Observations of Wood Thrush Nest Predators in a Large Contiguous Forest." Wilson Bulletin 112, no. 1 (2000): 82-87.

Farnsworth, George L., Kendrick C. Weeks, and Theodore R. Simons. "Validating the Assumptions of the Mayfield Method." Journal of Field Ornithology 71, no. 4 (2000): 658-664.

Simons, Theodore R.. Assessing the Diversity and Habitat Associations of Salamanders in Great Smoky Mountains National Park In 1998 Annual Report. Raleigh, NC: North Carolina State University, 1999.

Farnsworth, George L., and Theodore R. Simons. "Factors Affecting Nesting Success of Wood Thurshes in Great Smoky Mountains National Park." The Auk 116, no. 3 (1999): 1075-1082.

Shriner, Susan A., Theodore R. Simons, and George L. Farnsworth. "A GIS-Based Habitat Model for Wood Thrush, Hylocichla mustelina, in Great Smoky Mountains National Park." In Predicting Species Occurrences:  Issues of Accuracy and Scale., 1999.

Simons, Theodore R., and Susan A. Shriner. Ecology and Conservation of Neotropical Migrants in the Southern Appalachians In 1996 Annual Report to the National Park Service. Raleigh, North Carolina: North Carolina State University, 1997.

Simons, Theodore R., and Kerry N. Rabenold. Characterization of Deciduous Forest Breeding Bird Communities of Great Smoky Mountains National Park Progress Report In Progress Report. Gatlinburg, TN: National Park Service, 1993.