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Jenkins, Michael A.. "Vegetation and Ecology of the ATBI Plots." ATBI Quarterly 2, no. 3 (2001): 6-7.
Jenkins, Michael A., Christopher R. Webster, and Janet H. Rock. "Effects of Chronic Herbivory and Historic Land Use on Population Structure of a Forest Perennial, Trillium catesbaei." Applied Vegetation Science 10, no. 3 (2007): 441-450.
Jenkins, Michael A., and Kristine D. Johnson. "Exotic Plant Species Invasion and Control in Great Smoky Mountains National Park, USA." In Invasive Plant and Forest Ecosystems, 295-322. New York: CRC Press, 2009.
Jenkins, Michael A., and Christopher R. Webster. "Spatial Patterning and Population Structure of a Common Woodland Herb, Trillium erectum, in Primary and Post-Logging Secondary Forests." Forest Ecology and Management 258, no. 11 (2009): 2569-2577.
Jenkins, Michael A., and Pete Biggam. "Soils Inventory Unearths New Species at Great Smoky Mountains National Park." In Natural Resource Year in Review - 2002: A Portrait of the Year in Natural Resource Stewardship and Science in the National Park System, edited by Natural Resource Information Division, 25. Washington, D.C.: National Park Service, 2003.
Jenkins, Michael A., Christopher R. Webster, and Janet H. Rock. "Effects of Chronic Herbivory and Historic Land Use on Population Structure of a Forest Perennial, Trillium catesbaei." Applied Vegetation Science 10, no. 3 (2007): 441-450.
Jenkins, Michael A., Shibu Jose, and Peter S. White. "Impacts of an Exotic Disease and Vegetation Change on Foliar Calcium Cycling in Appalachian Forests." Ecological Applications 17, no. 3 (2007): 869-881.
Jenkins, Michael A., and Peter S. White. "Cornus florida L. Mortality and Understory Composition Changes in Western Great Smoky Mountains National Park." Journal of the Torrey Botanical Society 129, no. 3 (2002): 194-206.
Jenkins, Michael A., Robert N. Klein, and Virginia L. McDaniel. "Yellow pine regeneration as a function of fire severity and post-burn stand structure in the southern Appalachian Mountains." Forest Ecology and Management 262 (2011): 681-691.
Jenkins, Michael A.. "Impact of the Balsam Woolly Adelgid (Adelges piceae Ratz.) on an Abies fraseri (Pursh) Poir. Dominated Stand near the Summit of Mount LeConte, Tennessee." Castanea 68, no. 2 (2003): 109-118.
Jenkins, Michael A.. "Vegetation Communities of Great Smoky Mountains National Park." Southeastern Naturalist 6, no. sp2 (2007): 35-56.
Jenkins, Michael A.. Thematic Accuracy Assessment: Great Smoky Mountains National Park Vegetation Map. Great Smoky Mountains National Park, Gatlinburg, TN: National Park Service, 2007.