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Cain, Stanley A.. "Ecological Work on the Great Smoky Mountains Region." The Journal of the Southern Appalachian Botanical Club 1, no. 3 (1936): 25-32.
Cain, Stanley A.. The Vegetation of the Great Smoky Mountains: An Ecological Study In Department of Botany. Chicago, IL: University of Chicago, 1930.
Cain, Stanley A.. "Synusiae as a Basis for Plant Sociological Field Work." The American Midland Naturalist 17, no. 3 (1936): 665-672.
Cain, Stanley A.. "Ecological Islands as Natural Laboratories." In Sixth Biennial Wilderness Conference . San Francisco, CA, 1959.
Cain, Stanley A.. "An Interesting Behavior of Yellow Birch in the Great Smoky Mountains." The Chicago Naturalist 3, no. 1 (1940): 20-21.
Cain, Stanley A.. Tertiary Elements of the Cove Hardwoods Forest of the Great Smoky Mountains National Park In Symposium on Biology of the Great Smoky Mountains National Park. Knoxville, TN: University of Tennessee, Department of Botany, 1938.
Cain, Stanley A.. "Ecological Studies of the Vegetation of the Great Smoky Mountains: II. The Quadrant Method Applied to Sampling Spruce and Fir Forest Types." The American Midland Naturalist 16, no. 4 (1935): 566-584.
Cain, Stanley A., and Louise G. Cain. "Size-Frequency Study of Pinus Palustris Pollen." Ecology 25, no. 2 (1944): 229-232.
Cain, Stanley A.. "A Biological Spectrum of the Flora of the Great Smoky Mountains National Park." Butler University Botanical Studies 7, no. 1 (1945): 11-24.
Cain, Stanley A.. A Preliminary Guide to the Greenbrier-Brushy Mountain Nature Trail, the Great Smoky Mountains National Park. Knoxville, TN: University of Tennessee, 1937.
Cain, Stanley A.. "Certain Floristic Affinities of the Trees and Shrubs of the Great Smoky Mountains and Vicinity." Butler University Botanical Studies 1 (1929).
Cain, Stanley A.. "Trees Grow on Stilts in Great Smoky Mountains." Science News Letter 28, no. 750 (1935): 125.
Cain, Stanley A.. "Botanical Trips in Connection With the Appalachian Trail Conference." Castanea: The Journal of the Southern Appalachian Botanical Club 2, no. 8 (1947): 93-97.
Cain, Stanley A.. "Characteristics of Natural Areas and Factors in Their Development." Ecological Monographs 17, no. 2 (1947): 185-200.
Cain, Stanley A., and Aaron J. Sharp. "Bryophytic Unions of Certain Forest Types of the Great Smoky Mountains." American Midland Naturalist 20, no. 2 (1938): 249-301.
Cain, Stanley A.. "Size-Frequency Characteristics of Abies Fraseri Pollen as Influenced by Different Methods of Preparation." American Midland Naturalist 31, no. 1 (1944): 232-236.
Cain, Stanley A.. "The Tertiary Character of the Cove Hardwood Forests of the Great Smoky Mountains National Park." Bulletin of the Torrey Botanical Club 70, no. 3 (1943): 213-235.