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"The Use of Bryophytic Polsters and Mats in the Study of Recent Pollen Deposition." American Journal of Botany 30, no. 5 (1943): 361-366.
"Tropical Bryophytes in the Southern Appalachians." Annals Bryologici 11 (1938): 141-144.
"Tree Canopy Biodiversity: Student Reserach Experienced in Great Smoky Mountains National Park." Systematics and Geography of Plants 74, no. 1 (2004): 47-65.
"Through the Year in the Great Smoky Mounatins National Park, Month by Month." In The Great Smokies and the Blue Ridge: The Story of the Southern Appalachians, edited by Roderick Peattie, 263-289. New York: The Vanguard Press, 1943.
"Taxonomic and Ecological Studies of Eastern Tennessee Bryophytes." The American Midland Naturalist 21, no. 2 (1939): 267-354.
Survey of Bryophytes and Lichens Along Foothills Parkway Right-of-Way 8D In Final Report . Pittman Center, TN: Great Smoky Mountains National Park, 1995.
A Summary of Bryology in the Great Smoky Mountains National Park. Knoxville, TN: University of Tennessee, 1938.
A Study of Epixylic Bryophyte Ecology on Frasser Fir Logs in the Great Smoky Mountains National Park. Knoxville, Tennessee: University of Tennesse, 1998.
Special reports, memoranda, lecture syllabi, radio-script. National Park Service.
"Spatial Distribution of Epiphytic Diatoms on Lotic Bryophytes." Southeastern Naturalist 8, no. 2 (2009): 305-316.
"Southern Appalachian Bryophytes in Europe." The Bryologist 44, no. 3 (1941): 66-68.
"Some Historical Factors and the Distribution of Southern Appalachian Bryphytes." The Bryologist 44, no. 1 (1941): 16-18.
A Review of Lichen and Bryophyte Elemental Content Literature with Reference to Pacific Northwest Species. Bellingham, WA: United States Department of Agriculture, Forest Service, 1999.
"Preliminary Report on the Liverworts of Eastern Tennessee." Journal of the Tennessee Academy of Science 6, no. 4 (1931): 163-173.
"Phytogeographical Correlations Between the Bryophytes of Eastern Asia and North America." THe Journal of the Hattori Botanical Laboratory, no. 35 (1972): 263-268.
"Notes on Interesting Bryophytes of the Southern Appalachians, IV." Castanea 9, no. 5/6 (1944): 106-108.
"Notes on Interesting Bryophytes of the Southern Appalachians, III." Castanea 7, no. 3 (1942): 39-42.
"Notes on Interesting Bryophytes of the Southern Appalachians, II." Castanea: The Journal of the Southern Appalachian Botanical Club 3, no. 1 (1938): 9-11.
"The Mosses of the Southern Blue Ridge Province and Their Phytogeographic Relationship." The Journal of the Elisha Mitchell Scientific Society 89, no. 1-2 (1973): 15-60.
Letter from Stupka to Aaron J. Sharp Regarding Notes from Recent Symposium, Edited by Aaron J. Sharp. Letter from Stupka to Aaron J. Sharp requesting notes from recent presentation on bryology given at a symposium. ed., 1938.
Letter from Stupka to A. J. Sharp Thanking Sharp for Presenting a Paper, Edited by Aaron J. Sharp. Letter from Stupka to A. J. Sharp thanking Sharp for presenting a paper at the Great Smoky Mountain symposium. ed., 1938.
Letter from Aaron J. Sharp to Arthur Stupka Regarding a Summary of Bryology, Edited by Arthur Stupka. Letter from Aaron J. Sharp to Arthur Stupka Regarding a Summary of Bryology. ed., 1938.
"Interesting Bryophytes, Mainly of the Southern Appalachains." The Journal of the Southern Appalachian Botanical Club 1, no. 5 (1936): 49-59.
Influence of Exogenous Distribution of Bryophyte Community Assemblage and Tree Regeneration Dynamics in Southern Appalachian SPruce-Fir Forests. Michigan: Michigan Technological University, 2009.
