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Jenkins, Michael A.. "Vegetation Communities of Great Smoky Mountains National Park." Southeastern Naturalist 6, no. sp2 (2007): 35-56.
Jenkins, Michael A., and Peter S. White. "Cornus florida L. Mortality and Understory Composition Changes in Western Great Smoky Mountains National Park." Journal of the Torrey Botanical Society 129, no. 3 (2002): 194-206.
Jenkins, Michael A., and Pete Biggam. "Soils Inventory Unearths New Species at Great Smoky Mountains National Park." In Natural Resource Year in Review - 2002: A Portrait of the Year in Natural Resource Stewardship and Science in the National Park System, edited by Natural Resource Information Division, 25. Washington, D.C.: National Park Service, 2003.
Jenkins, Michael A., and Kristine D. Johnson. "Exotic Plant Species Invasion and Control in Great Smoky Mountains National Park, USA." In Invasive Plant and Forest Ecosystems, 295-322. New York: CRC Press, 2009.
Jenkins, Michael A.. "Vegetation and Ecology of the ATBI Plots." ATBI Quarterly 2, no. 3 (2001): 6-7.
Jenkins, Michael A.. "Impact of the Balsam Woolly Adelgid (Adelges piceae Ratz.) on an Abies fraseri (Pursh) Poir. Dominated Stand near the Summit of Mount LeConte, Tennessee." Castanea 68, no. 2 (2003): 109-118.
Jenkins, Michael A., Shibu Jose, and Peter S. White. "Impacts of an Exotic Disease and Vegetation Change on Foliar Calcium Cycling in Appalachian Forests." Ecological Applications 17, no. 3 (2007): 869-881.
Jenkins, Michael A., and Christopher R. Webster. "Spatial Patterning and Population Structure of a Common Woodland Herb, Trillium erectum, in Primary and Post-Logging Secondary Forests." Forest Ecology and Management 258, no. 11 (2009): 2569-2577.
Jenkins, Michael A., Christopher R. Webster, and Janet H. Rock. "Effects of Chronic Herbivory and Historic Land Use on Population Structure of a Forest Perennial, Trillium catesbaei." Applied Vegetation Science 10, no. 3 (2007): 441-450.
Jenkins, Michael A.. Thematic Accuracy Assessment: Great Smoky Mountains National Park Vegetation Map. Great Smoky Mountains National Park, Gatlinburg, TN: National Park Service, 2007.
Jenkins, Michael A., Robert N. Klein, and Virginia L. McDaniel. "Yellow pine regeneration as a function of fire severity and post-burn stand structure in the southern Appalachian Mountains." Forest Ecology and Management 262 (2011): 681-691.
Jenkins, Michael A., Christopher R. Webster, and Janet H. Rock. "Effects of Chronic Herbivory and Historic Land Use on Population Structure of a Forest Perennial, Trillium catesbaei." Applied Vegetation Science 10, no. 3 (2007): 441-450.