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1959
Cain, Stanley A.. "Ecological Islands as Natural Laboratories." In Sixth Biennial Wilderness Conference . San Francisco, CA, 1959.
1947
Cain, Stanley A.. "Botanical Trips in Connection With the Appalachian Trail Conference." Castanea: The Journal of the Southern Appalachian Botanical Club 2, no. 8 (1947): 93-97.
Cain, Stanley A.. "Characteristics of Natural Areas and Factors in Their Development." Ecological Monographs 17, no. 2 (1947): 185-200.
1945
Cain, Stanley A.. "A Biological Spectrum of the Flora of the Great Smoky Mountains National Park." Butler University Botanical Studies 7, no. 1 (1945): 11-24.
1942
Yard, Robert Sterling, Wendell Holmes Camp, and Stanley A. Cain. "The Great Smoky Wilderness." The Living Wilderness 7, no. 4 (1942): 7-19.
1939
Jennison, Harry Milliken, and Stanley A. Cain. Botany Department Images of the Smoky Mountains, 1931-1946 In Botany Department Images of the Smoky Mountains. University of Tennessee Libraries, Special Collections , 1939.
1938
Cain, Stanley A., and Aaron J. Sharp. "Bryophytic Unions of Certain Forest Types of the Great Smoky Mountains." American Midland Naturalist 20, no. 2 (1938): 249-301.
Cain, Stanley A.. Tertiary Elements of the Cove Hardwoods Forest of the Great Smoky Mountains National Park In Symposium on Biology of the Great Smoky Mountains National Park. Knoxville, TN: University of Tennessee, Department of Botany, 1938.
1936
Cain, Stanley A.. "Ecological Work on the Great Smoky Mountains Region." The Journal of the Southern Appalachian Botanical Club 1, no. 3 (1936): 25-32.
Cain, Stanley A.. "Synusiae as a Basis for Plant Sociological Field Work." The American Midland Naturalist 17, no. 3 (1936): 665-672.
1930
Cain, Stanley A.. The Vegetation of the Great Smoky Mountains: An Ecological Study In Department of Botany. Chicago, IL: University of Chicago, 1930.