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Jaenike, John. "Genetic Complexity of Host-selection Behavior in Drosophila." Proceedings of the National Academy of Sciences of the United States of America 83 (1986): 2148-2151.
Jaenike, John. "Intraspecific Variations for Resource Use in Drosophila." Biological Journal of the Linnean Society, no. 27 (1986): 47-56.
Jaenike, John, Davis E. Parker, and Robert K. Selander. "Clonal Niche Structure in the Parthenogenetic Earthworm Octolasion Tyrtaeum." American Midland Naturalist 116, no. 2 (1980): 196-205.
Jaenike, John. "Genetic and Environmental Determinants of Food Preference in Drosophila Tripunctata." Evolution 39, no. 2 (1985): 362-369.